Get main input for SCOPE — getinputLUT • SCOPEinR

getinputLUT extracts one group of SCOPE model input parameters (a single row, or a set of rows, of a LUT/input table) into the named list structure expected by the rest of SCOPEinR (leaf biology, meteo, canopy structure, geometry, soil, coordinates, time series, or multilayer leaf biochemistry profile). For dataset == 'soil', it also derives the soil thermal inertia (GAM, via Soil_Inertia0 or Soil_Inertia1) and, optionally, the soil/canopy resistances rss/rbs (via calc_rssrbs).

Usage

getinputLUT(inputLUT, dataset, calc.heat, calc.rss_rbs)

Arguments

inputLUT: data.frame or matrix. LUT/input table with one column per named parameter (e.g. N, Cab, LAI, tts, Ta, ...) and one row per simulation.
dataset: character. Which group of parameters to extract; one of 'leafbio', 'meteo', 'canopy', 'angles', 'soil', 'Coordinates', 'mly' or 'timeseries'.
calc.heat: numeric. Soil heat flux method used only when dataset == 'soil': 0 estimates GAM with Soil_Inertia0 (from cs, rhos, lambdas), 1 estimates GAM with Soil_Inertia1 (from SMC), any other value (default 2) leaves GAM as NA (soil heat flux computed elsewhere as 0.35*Rn).
calc.rss_rbs: numeric. Flag used only when dataset == 'soil': 0 (default) uses rss/rbs directly from inputLUT; any other value recomputes them from SMC/LAI/rbs via calc_rssrbs.

Value

A named list with the extracted parameters for the requested dataset (e.g. leafbio, meteo, canopy, angles, soil, coord, timeseries, or mly).

Author

Carlos Camino

Examples

if (FALSE) { # \dontrun{
leafbio <- getinputLUT(inputLUT, dataset = 'leafbio')
soil <- getinputLUT(inputLUT, dataset = 'soil', calc.heat = 2, calc.rss_rbs = 0)
} # }